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Woke up, got out of bed/ Dragged a comb across my head

Posted by Violette Zhu on 2009-07-10

Almost every morning, all the Howard Hughes kids meet up in the BioSci building and we either have group discussions, amazing seminars, or field trips (!!). Then we split up into our labs and begin work there (usually around 9:30 to 10:00)

Every morning the fish are fed, egg boxes are checked, and the number of eggs from each tank is recorded. Depending on the number of eggs the fish choose to provide, we may spawn one or two tanks to collect eggs for experiments.

One of the first things you learn when working with living organisms is that they are fickle. They're selfish and they honestly do not care whether or not you get enough eggs for your experiment. Therefore, you must plan your day around their schedules. On good days, there will be a lot of pregnant fish ("fatties") in both populations (King's Creek and Elizabeth River), and you'll have a nice, busy day where you'll get lots of work done. Inevitably, there will also be days where you have nothing to work with, and it is on days like this that you find time to write blog posts.

Slacker days usually consist of a lot of paper-reading, wikipedia-surfing (I try to stay on topic as much as I can), email-checking, AP-Chem-ing, and blogging, of course. Sometimes I'll shadow someone in my lab while they are doing their experiments, which are totally different from mine. I really enjoy that, because while I will not need to do an EROD assay for this particular project, it's really cool looking at flourescent fish bladders under the microscope. And it might be useful later on, I guess. Through shadowing others I have also chopped/mashed up fish for body PAH-level tests, screened zebrafish embryos, helped with RNA extractions and RT-PCR, and scored fish deformities. Other than that, I just try to make myself helpful.

If we actually do get a good number of eggs out of the egg boxes, we'll manually spawn a few tanks of Killifish for some embryos. The reason why we manually spawn fish (a LOT harder than it sounds, hopefully) is that we want the eggs to be approximately the same age while we are doing our experiments. Within a few hours, an embryo can go from being 1 cell to 32 cells, so to get a uniform experimental group we spawn them at the same time. Plus, manually spawned eggs are much better quality, in general.

Next, I screen the fish under a microscope. I separate the bad eggs from the healthy ones. This is usually a long and arduous process, especially when you have thousands of eggs to screen. Always, always, ALWAYS bring your iPod to the lab; you do not want to be stuck screening eggs without it. Your eyes will bleed from staring at the tiny little buggers for hours on end (this is unavoidable), but there is no reason why you need to be bored out of your mind as well.

In the afternoon, we dose the embryos that we gathered in the morning. We give them their poison. Then we record mortality rates at 24 and 48 hours. I always feel bad knowing that even the controls, which I consider lucky since they usually survive my experiments, will die when we're done with them. To euthanize embryos we just pop them in the freezer for a few hours. But then again, we eat fish all the time, and don't feel bad about eating caviar, so I guess this isn't that different.

Max usually comes by the lab in the late afternoon to feed the fish, change the water in the killifish systems, and make sure everything's running properly. Most days it is, but once in a while something goes wrong. Like yesterday. One of the pumps in the Z-system broke, lowering the dissolved oxygen levels in the water. As a result, a few of the bigger fish were asphyxiated. By the way, Max is ginormous (6'8''??). Just fyi.

Haha okay so yesterday we had to evacuate the building because of a "fire" (this isn't really an ordinary day-in-the-life story, though I hear false fire alarms are pretty common here). Our entire lab was pretty annoyed, since some experiments are time-sensitive, and leaving the building for half an hour would mean re-doing the entire thing. My mentor assumed that the machinery must have broken, because there was a fire drill that morning as well. But I just found out that it was actually Nancy and Lavender's lab's fault. Thanks a lot guys. Just kidding, I still love you. Can you tell that I'm having an easy-breezy morning today?

ANYWAY, I'll stop now! Have an awesome day everyone!
 

10 comments so far

Posted by Nancy on 2009-07-10
HAHAHAHA. love ya. yeah...we were having some autoclave problems. at least your lab didn't smell like fried poop.
Posted by Shalini on 2009-07-10
This is fantastic. I am excited to know more about what happens to the killifish. I also just really enjoy saying and typing "killifish." Also, I too have my ipod on. I don't make solutions without it! :o)
Posted by Leighanne on 2009-07-12
This is an amazing blog! haha.. You know, at least you don't have an emo mark for the rest of your life because of an autoclave burn.. And how are you guys working in lab with ipods? I don't think I'm allowed... so instead of enjoying music and plating/streaking/hours and hours of arduous work, I spend my time working with bleeding eyes! haha
Posted by Kriti Sharma on 2009-07-13
so organisms that don't give up their eggs to researchers are selfish? :) also do you know why manually fertilized eggs are better quality?
Posted by Violette Zhu on 2009-07-13
Yeah Nancy it just smells like poop in general. Killifishkillifishkillifishkillifish or its other exciting name, mummichogmummichogmummichogmummichog I just listen to my iPod while screening eggs; the rest of the time I actually have to pay attention to what's going on around me, haha. YES! THEY ARE! Well a fair number of egg box eggs get crushed by the egg boxes (bad), or are hidden away in corners and don't get fertilized (also bad). We also get them at various stages of development so it's harder to tell which ones are just slow and which ones are defective.
Posted by Connie on 2009-07-13
I can never listen to my iPod because I get paranoid when I can't hear things... I originally thought sound-canceling earbuds would be a good idea, but evidently they were not. So at first I didn't get the whole mummichog thing and I thought "mummichogmummichogmummichogmummichog" was all one word and it was like the scientific name or something. I was all WHOA THAT'S SO COOL and then I realized it was just "mummichog" 4 times in a row without any spaces.
Posted by Violette Zhu on 2009-07-14
Connie, you're special.
Posted by Toyosi on 2009-07-14
Party on Violette's blog!! WOOOT. :D
Posted by Anthony Wu on 2009-07-20
Haha...'living organisms are selfish.' What is the alternative, non-selfish entity: dead organisms or living non-organisms? Btw...the tag list at the side is impressive, to say the least. I love how you added the tag oopsies. So many questions from ignorant me...Mummichog? Where does that name even COME from, Violette? Oh, you get the fish from those places. I thought you got it from one of those outdoor...artificial...pools...
Posted by Violette Zhu on 2009-07-21
THE LIVING DEAD. Yeah, that's right whoooo I just blew your mind. I'm not sure where it came from, but I didn't make it up (unfortunately!). Haha yeah no they're from outdoor artificial sinks, actually.