Duke University | Howard Hughes Undergraduate Program

2009

Georgiev S., A. Boyle, K. Jayasurya, X. Ding, S. Mukherjee, U. Ohler U. Evidence ranked motif identification. Genome Biology, in revision. (Ding-VIP undergraduate 2008; Georgiev-VIP graduate student)

Lee N.Y., J.C. Haney, J. Sogani, G.C. Blobe. 2009. Casein Kinase 2beta as a Novel Enhancer of Activin-like Receptor-1 Signaling. FASEB J. 2009 Nov;23(11):3712-21. Epub 2009 Jul 10.  (Research Fellow 2007)

Liu, I.M., S.H. Schilling, K.A. Knouse, L. Choy, R. Derynck, and X.-F. Wang. 2009. TGFb-stimulated Smad1/5 Phosphorylation Requires the ALK5 L45 Loop and Mediates the Pro-migratory TGFb Switch. The EMBO Journal. 28:88-98. (Research Fellow 2007)

Nijhout, H. Frederik, Jesse F. Gregory, Courtney Fitzpatrick, Eugenia Cho, Cornelia M. Ulrich, Michael C. Reed. 2009.  A Mathematical Model Gives Insights into the Effects of B6 Deficiency on One-Carbon and Glutathione Metabolism. Journal of Nutrition Vol 139, No. 4, 784-791, April 2009. (Cho-Research Fellow 2008 and VIP undergraduate 2009; Fitzpatrick-VIP graduate student 2008)

2008

Shuen, J.A., M. Chen, B. Gloss, and N. Calakos. (2008). Drd1a-tdTomato BAC transgenic mice for simultaneous visualization of medium spiny neurons in the direct and indirect pathways of the basal ganglia. The Journal of Neuroscience 28(11): 2681-2685. (Research Fellow 2007)

Bishop, K.L., A.K. Pai, D. Schmitt. 2008. Whole Body Mechanics of Stealthy Walking in Cats. PLoS ONE 3(11): e3808. doi:10.1371/journal.pone.0003808 (Research Fellow 2005)

Hallen, Mark A., Jinghai Ho, Christine Yankel, Sharon Endow.  2008. Fluorescence Recovery Kinetic Analysis of Tubulin Binding to the Mitotic Spindle.  Biophysical Journal, Volume 95, Issue 6, Pages 3048-3058 (Research Fellow 2005)

Haskins, K.A., Russell, J.F., Gaddis, N., Dressman, H.K., and Aballay, A. (2008). Unfolded protein response genes regulated by CED-1 are required for Caenorhabditis elegans innate immunity. Developmental Cell. 15:87-97. (Research Fellow 2005)

Hatcher, L. Q. L. Hong, W.D. Bush, T. Carducci, J.D. Simon, J. D. 2008. Quantification of the Binding Constant of Copper (II) to the Amyloid-beta Peptide. J. Phys. Chem. B 2008. 112 (27), pp 8160–8164   DOI: 10.1021/jp710806s  (Research Fellow 2007)

Orlando, David A., Charles Y. Lin, Allister Bernard, Jean Y. Wang, Joshua E.S. Socolar, Edwin S. Iversen, Alexander J. Hartemink and Steven B. Haase. 2008. Global control of cell cycle transcription by coupled CDK and network oscillators. Nature Vol 453, p. 944-947. (Summer Scholar 2004)

Reed, Michael C., Rachel Thomas,  Jovana Pavisic, S. James, Cornelia Ulrich, and H. Frederik Nijhout. 2008. A mathematical model of glutathione metabolism. Theoretical Biology and Medical Modelling 2008, 5:8  (Pavasic-VIP undergraduate 2007; Thomas-VIP graduate student)

Styer, Katie L., Varsha Singh, Evan Macosko, Sarah E. Steele, Cornelia I. Bargmann, Alejandro Aballay. 2008.  Caenorhabditis elegans Is Regulated by Neurons Expressing NPR-1/GPCR.  Science 17 October 2008: 460-464.  DOI: 10.1126/science.1163673 (Research Fellow 2007)

Wooldridge, Anne, Christopher N. Fortner, Beata Lontay, Takayuki Akimoto, Ronald L. Neppl, Carie Facemire, Michael Datto, Ashley Kwon, Everett McCook, Ping Li, Shiliang Wang, Randy Thresher, Sara E. Miller, Jean-Claude Perriard, Timothy P. Gavin, Robert C. Hickner, Thomas M. Coffman, Avril V. Somlyo, Zhen Yan, and Timothy A. J. Haystead. 2008. Deletion of the Protein Kinase A/Protein Kinase G Target SMTNL1 Promotes an Exercise-adapted Phenotype in Vascular Smooth Muscle.  J Biol Chem. 2008 April 25; 283(17): 11850–11859.  (Research Fellow 2005)

2007

Cantlon, Jessica, Rebecca Fink, Kelley Safford, Elizabeth M. Brannon. 2007. Heterogeneity impairs numerical matching but not numerical ordering in preschool children. Developmental Science, Volume 10, Number 4, July 2007 , pp. 431-440.  (Research Fellow 2004)

Davila, Marco, Feifei Liu, Lindsay G. Cowell, Anne E. Lieberman, Emily Heikamp, Anjali Patel, and Garnett Kelsoe.  2007.  Multiple, conserved cryptic recombination signals in VH gene segments: detection of cleavage products only in pro–B cells.  J Exp Med. 2007 Dec 24;204(13):3195-208. Epub 2007 Dec 3  (Heikamp - Research Fellow 2002 and continuing fellowship 2003; Lieberman - Research Fellow 2003)

Liu, Feifei; Lindsay Cowell, Emily Heikamp, and Garnett Kelsoe.  2007.  Antigen-independent secondary lg rearrangement in B-cell development implications for receptor editing. J. Immunology 2007,178: B39 (Research Fellow 2002; continuing fellowship 2004)

Orlando David A., Charles Y. Lin, Allister Bernard, Edwin S. Iversen, Alexander J. Hartemink and Steven B. Haase. 2007. A Probabilistic Model for Cell Cycle Distributions in Synchrony Experiments. Cell Cycle Vol 6, No. 4. p. 478 - 488 Feb.  (Summer Scholar 2004)

Reed, Robert, Po-Hao Chen, and H. Frederik Nijhout. 2007. Cryptic variation in butterfly eyespot development: the importance of sample size in gene expression studies Evolution & Development 9:1, 2-9. (Research Fellow 2004, Summer Scholar 2005)

Sea Urchin Genome Sequencing Consortium. 2007. The genome of the sea urchin Strongylocentrotus purpuratus. Science Nov 10; 314(5801):941-52. (Including Rahul Satija, Research Fellow 2003, Summer Scholar 2004)

Tishkoff, Sarah A., et. al including Jesse S Silverman and Gregory A. Wray.  2007. Convergent adaptation of human lactase persistence in Africa and Europe. Nature Genetics Volume 39  Number 1 (Research Fellow 2004, Summer Scholar 2005)
 

2006

Walton, Felicia J., Joseph Heitman, and Alexander Idnurm. 2006. Conserved Elements of the RAM Signaling Pathway Establish Cell Polarity in the Basidiomycete Cryptococcus neoformans in a Divergent Fashion from Other Fungi. Molecular Biology of the Cell 17: 3768-3780. (Research Fellow 2004)

Darrabie, Marcus D., William F. Kendall and Emmanuel C. Opara. Effect of alginate composition and gelling cation on microbead swelling. Journal of Microencapsulation 2006, Vol. 23, No. 6, Pages 613-621 (Research Fellow)

Devalapalli, Adita P., Aaron Lesher, Karl Shieh, Jonathan S. Solow, Mary Lou Everett, Arpana S. Edala, Parker Whitt, Renee R. Long, Nolan Newton and William Parker, 2006.  Increased Levels of IgE and Autoreactive, Polyreactive IgG in Wild Rodents: Implications for the Hygiene Hypothesis. Scandinavian Journal of Immunology 64, 125-136. (Precollege Program 2002, 2004 and 2005)

Eyler, C.E., Telen, M.J.  .2006. The Lutheran glycoprotein: a multifunctional adhesion receptor. Transfusion. 46:4, 668–677.  (Research Fellow  2001)

Lesher, A., B. Li, P. Whitt, N. Newton, A.P. Devalapalli, K.Shieh, J.S. Solow & W. Parker. 2006. Increased IL-4 Production and Attenuated Proliferative and Proinflammatory Responses of Splenocytes from Wild-Caught Rats (Rattus Norvegicus). Immunol. and Cell Bio. 84:374-382. (Precollege Program 2002, 2004 and 2005)

Nijhout, H Frederik, Michael C Reed, Shi-Ling Lam, Barry Shane, Jesse F Gregory, III, and Cornelia M Ulrich. 2006. In silico experimentation with a model of hepatic mitochondrial folate metabolism. Theor Biol Med Model. 2006; 3: 40 (Research Fellow 2004)

Steinbach WJ, RA Cramer Jr, BZ Perfect, YG Asfaw, TC Sauer, LK Najvar, WR Kirkpatrick, TF Patterson, DK Benjamin Jr, J Heitman, JR Perfect. Calcineurin controls growth, morphology, and pathogenicity in Aspergillus fumigatus. Eukaryot Cell. 2006 Jul;5(7):1091-103. (Summer Scholar 2006)

Wang, D., N. Amornsiripanitch, X. Dong. 2006. A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants.  PloS Pathogens, vol. 2 (2006), pp. 1042-1050 . (Summer Scholar 2005)
 

2005

Walton, Felicia J., Alexander Idnurm and Joseph Heitman. 2005. Novel gene functions required for melanization of the human pathogen Cryptococcus neoformans. Molecular Microbiology 57:1381-1396. (Research Fellow 2004)

Bollinger, R.R., M.L. Everett, S. Wahl, Y.-H. Lee, P.E. Orndorff, & W. Parker. (2005) Secretory IgA and Mucin-Mediated Biofilm Formation by Environmental Strains of Escherichia coli: Role of Type 1 pili. Molecular Immunology, 43, 378-387. (Precollege Program 2003)

Lee, Yoonsung, Sara Grill, Angela Sanchez, Maureen Murphy-Ryan and Kenneth D. Poss. 2005. Fgf signaling instructs position-dependent growth rate during zebrafish fin regeneration. Development 132, 5173-5183 (Research Fellow 2003)

Oliver, T.G., T.A. Read, J.D. Kessler, A. Mehmeti, J.F. Wells, T.T. Huynh, S.M. Lin, R.J. Wechsler-Reya. 2005. Loss of patched and disruption of granule cell development in a pre-neoplastic stage of medulloblastoma. Development 132(10): 2425-39. (Research Fellow 2003)

Schulz Angela, Talal Mousallem, Maya Venkataramani, Dixie-Ann Persaud-Sawin, Adam Zucker, Chiara Luberto, Alicja Bielawska, Jacek Bielawski, Joost C M Holthuis, S Michal Jazwinski, Lina Kozhaya, Ghassan S Dbaibo, Rose-Mary N Boustany. 2005. The CLN9 protein- a regulator of dihydroceramide synthase. J Biol Chem.(2005); 16303764. (Summer Scholar 2004)

2004

Dagenbach, Elise M. and Sharyn A. Endow. 2004. A new kinesin tree. Journal of Cell Science 117, 3-7. (Research Fellow 2002)

Eyler, C.E., T. L. Jackson, L. DeCastro, R. Zennadi, J.M. Vance, A. Ashley-Koch, and M.J. Telen. 2004. Effects of single nucleotide polymorphisms of the a 2 adrenergic receptor and of adenylate cyclase on sickle red cell adhesion to laminin. Blood, 104, 969.  (Research Fellow 1999)

Hawrylyshyn, K.A., G.A. Michelotti, F. Cogé, S-P. Guénin, D.A. Schwinn. 2004. Update on human α1-adrenoceptor subtype signaling and genomic organization. Trends Pharmacol Sci. 25: 449-455. (Research Fellow 2002)

Bendiksby, M.S., A.F. Jarman, A. F., and M.L. Platt.  2004. Motivation focuses attention and enhances neuronal selectivity in parietal cortex. 2004. Journal of Vision. 4(8):624, 624a. (Research Fellow 2003)

Chitano, Pasquale, Charles L. Worthington, Janet A. Jenkin, Newman L. Stephens, Sylvia Gyapong, Lu Wang, and Thomas M. Murphy. 2004. Ontogenesis of myosin light chain phosphorylation in guinea pig tracheal smooth muscle. Pediatric Pulmonology 39 (2): 108 - 116.  (Research Fellow 2003)

Immormino RM, DE Dollins, PL Shaffer, KL Soldano, MA Walker, DT Gewirth. 2004. Ligand-induced conformational shift in the N-terminal domain of GRP94, an Hsp90 chaperone. J. Biol. Chem. 279, 46162-46171. (Research Fellow 2000)

Koch, Timothy R., Ann Petrob, Marcus Darrabie and Emmanuel C. Opara. 2004. Effect of the H, K–ATPase inhibitor, esomeprazole magnesium, on gut total antioxidant capacity in mice. The Journal of Nutritional Biochemistry Volume 15, Issue 9, September 2004, Pages 522-526.  (Research Fellow 1999)

Orndorff, P.E., A. Devalapalli, S. Palestrant, A. Wyse, M.L. Everett, R. R. Bollinger & W. Parker. (2004) Immunoglobulin-Mediated Agglutination of and Biofilm Formation by Escherichia coli K-12 require the Type 1 Pilus Fiber. Infection & Immunity, 72, 1929-1938. (Precollege Program 2002)

Yang AS, Martin CH, Nijhout HF. Geographic variation of caste structure among ant populations. Curr Biol. 2004 Mar 23;14(6):514-9. (Research Fellow 2002)

Zen Q, M. Batchvarova, C.A. Twyman, C.E. Eyler, H. Qiu, L.M. De Castro, M.J. Telen. 2004. B-CAM/LU expression and the role of B-CAM/LU activation in binding of low- and high-density red cells to laminin in sickle cell disease. Am J Hematol. 5(2): 63-72.  (Twyman - Research Fellow 1999, Eyler - Research Fellow 2001)